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Accelerated MR Cholangiopancreatography with Deep Learning-based Reconstruction

Kim, Jinho, Nickel, Marcel Dominik, Knoll, Florian

arXiv.org Artificial Intelligence

This study accelerates MR cholangiopancreatography (MRCP) acquisitions using deep learning-based (DL) reconstruction at 3T and 0.55T. Thirty healthy volunteers underwent conventional two-fold MRCP scans at field strengths of 3T or 0.55T. We trained a variational network (VN) using retrospectively six-fold undersampled data obtained at 3T. We then evaluated our method against standard techniques such as parallel imaging (PI) and compressed sensing (CS), focusing on peak signal-to-noise ratio (PSNR) and structural similarity (SSIM) as metrics. Furthermore, considering acquiring fully-sampled MRCP is impractical, we added a self-supervised DL reconstruction (SSDU) to the evaluating group. We also tested our method in a prospective accelerated scenario to reflect real-world clinical applications and evaluated its adaptability to MRCP at 0.55T. Our method demonstrated a remarkable reduction of average acquisition time from 599/542 to 255/180 seconds for MRCP at 3T/0.55T. In both retrospective and prospective undersampling scenarios, the PSNR and SSIM of VN were higher than those of PI, CS, and SSDU. At the same time, VN preserved the image quality of undersampled data, i.e., sharpness and the visibility of hepatobiliary ducts. In addition, VN also produced high quality reconstructions at 0.55T resulting in the highest PSNR and SSIM. In summary, VN trained for highly accelerated MRCP allows to reduce the acquisition time by a factor of 2.4/3.0 at 3T/0.55T while maintaining the image quality of the conventional acquisition.


Unsupervised Deep Learning for MR Angiography with Flexible Temporal Resolution

Cha, Eunju, Chung, Hyungjin, Kim, Eung Yeop, Ye, Jong Chul

arXiv.org Machine Learning

Time-resolved MR angiography (tMRA) has been widely used for dynamic contrast enhanced MRI (DCE-MRI) due to its highly accelerated acquisition. In tMRA, the periphery of the k-space data are sparsely sampled so that neighbouring frames can be merged to construct one temporal frame. However, this view-sharing scheme fundamentally limits the temporal resolution, and it is not possible to change the view-sharing number to achieve different spatio-temporal resolution trade-off. Although many deep learning approaches have been recently proposed for MR reconstruction from sparse samples, the existing approaches usually require matched fully sampled k-space reference data for supervised training, which is not suitable for tMRA. This is because high spatio-temporal resolution ground-truth images are not available for tMRA. To address this problem, here we propose a novel unsupervised deep learning using optimal transport driven cycle-consistent generative adversarial network (cycleGAN). In contrast to the conventional cycleGAN with two pairs of generator and discriminator, the new architecture requires just a single pair of generator and discriminator, which makes the training much simpler and improves the performance. Reconstruction results using in vivo tMRA data set confirm that the proposed method can immediately generate high quality reconstruction results at various choices of view-sharing numbers, allowing us to exploit better trade-off between spatial and temporal resolution in time-resolved MR angiography.


k-Space Deep Learning for Parallel MRI: Application to Time-Resolved MR Angiography

Cha, Eunju, Kim, Eung Yeop, Ye, Jong Chul

arXiv.org Machine Learning

Time-resolved angiography with interleaved stochastic trajectories (TWIST) has been widely used for dynamic contrast enhanced MRI (DCE-MRI). To achieve highly accelerated acquisitions, TWIST combines the periphery of the k-space data from several adjacent frames to reconstruct one temporal frame. However, this view-sharing scheme limits the true temporal resolution of TWIST. In addition, since the k-space sampling patterns have been specially designed for a specific generalized autocalibrating partial parallel acquisition (GRAPPA) factor, it is not possible to reduce the number of views in order to reconstruct images with a better temporal resolution. To address these issues, this paper proposes a novel k-space deep learning approach for parallel MRI. In particular, inspired by the recent mathematical discovery that links Hankel matrix decomposition to deep learning, we have implemented our neural network so that accurate k-space interpolations are performed simultaneously for multiple coils by exploiting the redundancies along the coils and images. In addition, the proposed method can immediately generate reconstruction results with different numbers of view-sharing, allowing us to exploit the trade-off between spatial and temporal resolution. Reconstruction results using in vivo TWIST data set confirm the accuracy and the flexibility of the proposed method.